Publications

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Microbial ecology of enteric infections

Fishbein, SRS*, Deveaux A*, Khanna S*, Agee W, Ferreiro A, Liao J, Ning J, Mahmud B, Wallace M, Hink T, Reske K, Guruge J, Leekha S, Dubberke E, Dantas G. Commensal-pathogen dynamics structure disease outcomes during Clostridioides difficile colonization. Cell Host & Microbe. 2025.

Fishbein SRS, Robinson JI, Hink T, Reske KA, Newcomer EP, Burnham CD, Henderson JP, Dubberke ER, Dantas G. Multi-omics investigation of Clostridioides difficile-colonized patients reveals pathogen and commensal correlates of C. difficile pathogenesis. Elife. 2022.

Fishbein SRS, Hink T, Reske KA, Cass C, Struttmann E, Iqbal ZH, Seiler S, Kwon JH, Burnham CA, Dantas G, Dubberke ER. Randomized Controlled Trial of Oral Vancomycin Treatment in Clostridioides difficile-Colonized Patients. mSphere. 2021

Phylogenomics of pathogenic bacteria

Newcomer EP* and Fishbein SRS*, Zhang K, Hink T, Reske KA, Cass C, Iqbal ZH, Struttmann EL, Burnham CAD, Dubberke ER, Dantas G. Genomic surveillance of Clostridioides difficile transmission and virulence in a healthcare setting. mBio. 2024.

Choi, J, Keen, E, Fishbein, SRS, Prusa, J, Wallace, MA, Zimbric, M, Mejia-Chew, CR, Mehta, SB, Bailey, TC, Caverly, LJ, Burnham, CA, Dantas, G. Genomic analyses of longitudinal Mycobacterium abscessus isolates in a multi-center cohort reveals parallel signatures of in-host adaptation. J Infect Dis. 2023

Ransom EM, Sawhney SS, Dantas G, Burnham CD, Fishbein SRS. Draft Genome Sequence of a Mycobacterium Strain Isolated from a Clinical Wound Sample. Microbiol. Resour. Announc. 2022